源碼閱讀網(wǎng)APM監(jiān)控項(xiàng)目特訓(xùn)營(yíng)
#a second pass to analyze covariation remaining after recalibartion
java -jar $GATK \
? ? -T BaseRecalibrator \
? ? -R $DB/hg19.fa \
? ? -I dedup_sample1.bam \
? ? -L chr22 \ ?
? ? -knownSites $DB/dbsnp_138.hg19.vcf \
? ? -knownSites $DB/Mills_and_1000G_gold_standard.indels.hg19.sites.vcf \
? ? -knownSites $DB/1000G_phase1.indels.hg19.sites.vcf \
? ? -BQSR recal_data_sample1.table
? ? -o post_recal_data_sample1.table
標(biāo)簽：
